floyd droid62 said:
it as a variable phase 180 to zero do mean purposely phase out a particular frequency by cancellation
At the crossover frequency, say 80 Hz, the phase of the main speakers and the subwoofer will be different relative to the input signal and significantly so if the main speakers are small and close to the driver and box resonances. In addition, if the distance from the listener to the mains and sub is different this will also change the relative phase. The effects are additive and so a single phase knob can fix both at the crossover frequency. Different frequencies in the crossover region will strictly require a different phase correction but in practise it shouldn't be too far off the one at 80 Hz.
Looking at the picture of your room the speakers appear to be on the long wall with you sitting with your head against the opposite long wall. If the speakers are at 25% and 75% along the wall and you are sitting at 50% along the other wall then the 40 Hz mode will not be heard. You would need to move away from the centre to pick it up. However, the 50 Hz mode will be the worst it is possible to make it and since you are sitting against the wall you will not be able to put a sub behind you.
It is a poor layout but one temporary test you can do to check for how much of a problem the 50 Hz mode is would be to move the couch forward and put the sub behind you (or move the couch out the way and sit on the sub). The mains will be about 10 ms away and the sub about 1-2 ms away requiring about 8 ms of delay to the sub. At 50 Hz one cycle takes 20 ms and so 0-180 degrees gives us 0-10 ms of delay. We need to invert the signal which means adding or subtracting 180 degrees or, more simply, swapping the +ve and -ve leads on the sub or mains. And we need to compensate for whatever the phase difference is between the mains and sub. This might be 40 degrees or more depending on the details of drivers and cabinets. The gain on the sub will need to be lower than normal because it is so close. The high pass filter on the sub needs to be set just above 50 Hz at highest slope (how do you change between sealed and ported slopes?) since it is unlikely to be helping at higher frequencies. You seem to have just about enough flexibility to pull the mode down to a reasonably flat response but it is likely to be very fiddly to do by ear.