Probably the other thing to add is that microphone placement is also important. When I had my old M&K's, I did two independent auto setups, with the mic moved literally about an inch, and the difference between the two was quite big. One placement had the YPAO set them to 100Hz crossover, and the other set them to 160Hz.
So it is placement of the speakers in relation to the room boundaries, and the placement of the microphone that will affect the outcome.
I've had small KEF KHT3005 speakers being set to 40Hz crossover, which is never something you'd do yourself!