stokes2608:What are your settings on the Denon? I seem to have solved the problem by increasing the subwoofer out put.
With 2310/KEF3005/HTB2 sub, I firstly set the sub to +6db, ran Audyssey, and Audyssey cut the 2310's bass output by -6db in my room. Setting the sub's gain to 0db (i.e. no bass boost) and running Audyssey again, Audyssey then corrected the 2310 to give a perfectly flat bass frequency response, which indicates that Audyssey seems to be doing it right, and it does sound exactly right to my ears... the bass is full and detailed, yet appears to be coming from the main speakers not the sub. But Audyssey gives a result of how it should be, not how you may want it to be - again, there's a really good blog about that on Audyssey's own web-site.
But importantly, I know the sub is correctly positioned in my room. I previously had a hi-fi with a big REL subwoofer in that room, and I spent a long time experimenting exactly where that sub should be to eliminate room boom and suck-outs. With a change of hi-fi speakers, I don't need that REL anymore, so that's where I've placed the HTB2 for the home cinema, and it works brilliantly in that same location. But that's in my room, and every room is acoustically different.
There's a really useful WHF guide on "How to set-up your home cinema" under the "Video" section, and it shows you how to work out the best position for your subwoofer in your room - provided you have really long cables! But it's interesting to know where your sub should be positioned, even if for reasons of domestic harmony you're not allowed to put it there!