Okay, finished work a bit early today so moved the DacMagic into the living room (almost breaking the PSU in the process, but that's in another thread!) and connected the Sony BDP-S550 into it via a spare Vivanco digital coaxial cable. The DacMagic then connected into the Onkyo via a pair of old Straight Wire Chorus interconnects and the Marantz was already hooked directly into the Onkyo via a pair of Chord Crimsons.
I started with Airbag by Radiohead, played first through the Sony / DM and my initial impression was very good. However, after a play on the Marantz and switching back to the Sony / DM, it became clear that a few things were lacking - the Sony / DM had a narrower soundstage and details that sprung out on the Marantz seemed to be lost through the Sony / DM - over all, I felt the Marantz just made the song sound more engaging.
I then tried New Born from Muse and again, I was initially impressed by the Sony / DM, but a bit more switching between the two showed up the issues again - as was to be expected in many ways, timing wasn't as good as the Marantz where the notes were "crisper" and the excellent bass guitar riff just seemed a bit muddied on the Sony / DM, lost a little amongst the plethora of other instruments playing at the time. The main word that kept coming to me was some instruments just sounded a bit "fuzzy" compared to the Marantz - make of that what you will!
Finally I put on some music I know intimately, Remember by BT (I must have bought the ESCM album over 12 years ago now). This time I immediately noticed the narrow soundstage on the Sony / DM and after a few more listens through both systems, all the same issues were on show.
However, please don't take this wrong - the Sony / DM combination was still extremely good. As was proved on the first two test songs, I was initially very impressed - the vocals sounding particularly sweet on Remember and it was only after directly comparing with the Marantz that I was able to really identify the shortcomings. On quite a few occasions when listening to the Sony / DM I was completely drawn into the music, forgetting I was supposed to be concentrating, and this is no bad thing! To put it in summary, if I had to make room and could only have one box on the AV shelf, I could certainly be happy with the Sony / DM combination. However, if I had any ability to keep the Marantz, I would keep it without question - the extra benefits would make it worth it to me.
Since I had a bit of time, I also decided to quickly test out my AE unit connected into the DacMagic against the Marantz - well, if anything this absolutely confirmed my suspicion that the Sony was the weak link in the chain above - I really was hard pressed to tell the difference and a lot more listening is needed! For you, it also means that should you go down this path, a future Blu-Ray player upgrade could take this into consideration and look for one which could help sort any issues the Sony transport is clearly putting into the system.
Hope this helps, let me know if you've got any questions on the above.